We offer a course at the Marine Science Institute in UP Diliman
called “Biological Structures.” The topics we cover
range from biological molecules (small and large), to cells,
to organ systems, to whole organisms, to populations and ecosystems.
One of the recurring fundamental questions we ask is — are
there underlying principles, with fine similarities and differences,
at these different levels of biological structure?
The aim of “Biological Structures” is to “cross
borders and explore interfaces,” to give non-biology
science majors an introduction to structural biology. Most
of our students had been physics and math majors, and some
biology majors. More recently, computer science and engineering
majors have also enrolled in the course. For many years now,
physicists and mathematicians have been venturing into the
optical imaging and mathematical modeling of biological systems.
Some of us view physics and mathematics as the new “microscopes” of
biology. Computational biologists have been modeling biological
systems based on experimental data provided by biologists.
In an iterative process, these models are used to design
better experiments.
Even chemists are joining the bandwagon of biology. Biochemists,
biophysicists and molecular biologists have always been the
leaders in structural biology, but now organic and inorganic
chemists are designing and synthesizing photoactive molecules
(fluorescent molecules, bioluminescent molecules) of very
small sizes (nanometer — one billionth of a meter — in
length or diameter) to be able to tag and view biomolecules.
And engineers — they are exploring how certain biological
structures with unique properties (fibers that are extremely
strong, fibers with excellent optical properties) can be
used as models to produce new materials and solve engineering
problems in environment-friendly ways.
And so it makes sense for some non-biology majors to learn
more structural biology.
We are not so bold as to teach all the topics ourselves
(GPP-C lectures on small biological molecules; EAP lectures
on some of the larger biological molecules). Instead, we
recruit as co-teachers individuals who have expertise in
the topics we dare not teach.
GPP-C discusses lipids, steroids, glucose, carotenes and
porphyrins. These small biomolecules have important functions
in the life of many organisms and have been preserved throughout
evolution. And so we discuss their unique structural features.
Lipids are able to form inert membranes that compartmentalize
components in the cell. Steroids serve either as membrane
structures or hormones. Glucose is a major source of energy
and also of chiral carbon centers (carbons that have four
different types of groups attached to them) that can bind
specifically to other biomolecules. Carotenes are photo-reactive
and participate in the process of color vision, while porphyrins,
which are found in chlorophyll and hemoglobin, can capture
sunlight (in chlorophyll) or bind oxygen (in hemoglobin).
In a recent article, EAP wrote about “The New Engineers” of
DNA, proteins, cells and animals. Well, these small biomolecules
are also being “engineered” and GPP-C presents
examples of these in class.
EAP then talks about macromolecules and macromolecular assemblies,
for example, nucleic acids, proteins, viroids, and viruses.
Nucleic acids carry all the information that makes us what
we are and control the interpretation of that information
into useful entities, like proteins, carbohydrates, etc.
Proteins are the molecules that do the everyday chores to
maintain our body functions, that protect us from pathogens,
that serve as building blocks in our body structures, etc.,
etc. And, of course, certain macromolecules and macromolecular
assemblies cause us harm, for example, misfolded proteins,
viruses, and others.
Dr. Ernelea Cao of NSRI discusses unicellular and simple
organisms (mycoplasms, bacteria, protozoa and other lower
eukaryotes). Dr. Cynthia Saloma of NIMBB discusses the tissue
and organ systems of higher organisms from invertebrates
to vertebrates (mice and humans). For higher biological systems,
we take examples from the sea — where life began and
for which we have expertise at MSI. Dr. Edna Fortes talks
about marine plants, Dr. Ed Gomez and Dr. Perry Aliño
about marine animals, and Dr. Helen Yap about marine communities
and ecosystems.
In centuries past, there had been individuals who did very
important work in several fields. Isaac Newton, the physicist,
for example, co-invented calculus, and in his later years
practiced chemistry — alchemy, actually. A brilliant
mind in more modern times was Linus Pauling, who delved into
chemistry, biology, physics (just a little), and even medicine
(with his advocacy of vitamin C and with his seminal work
on molecular diseases). Isaac Newton and Linus Pauling were
exceptional people. A person who knows a lot about diverse
fields is a rarity. The amount of knowledge that has been
accumulated is already so large that these days it is difficult
for someone to be an expert in one topic, let alone several
(there are just not enough hours in a day to learn everything
that one wants to know).
Physicists, chemists, mathematicians, and engineers can
contribute a lot to biology. (Several of the first structural
biologists, for example, Sir Lawrence Bragg, Francis Crick,
and a few others, were originally trained as physicists.)
Because they come from different backgrounds, non-biologists
view a biological problem from a different perspective. Scientists
from various disciplines, when working together, will almost
surely move forward faster and farther than if they were
working independently of each other. Indeed, more and more
endeavors are becoming interdisciplinary. But it is probably
best if they can understand each other.
That, in essence, is the purpose of our “Biological
Structures” course. We want to expose the physicists,
the mathematicians, the engineers — even the philosophers — to
the language of biology. The chemists may already know the
language, but we wish to expose them to more of the biological
world.
* * *
Gisela P. Padilla-Concepcion is a professor at the Marine
Science Institute, College of Science, University of the
Philippines Diliman. Eduardo A. Padlan is an adjunct professor
at the same Institute. Both are members of the National
Academy of Science and Technology. They can be reached
at gpconcepcion@yahoo.com and fileap-mail@yahoo.com, respectively.